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Protein Name Alternative Name Mass Accession Number #Peptides Matched % Coverage
A-kinase anchor protein 9 Protein kinase A anchoring protein 9, PRKA9, A-kinase anchor protein 450 kDa, AKAP450, Yotiao, Hyperion protein, Centrosome- and Golgi-localized PKN-associated protein, CG-NAP 453671 Q99996 11 2
Adaptor-related protein complex 2 alpha-1 subunit Plasma membrane adaptoor HA2/AP2 adaptin alpha A subunit, Alpha-adaptin A, Adaptor protein complex AP-2 alpha-1 subunit, Clathrin assembly protein complex 2 alpha_A large chain, 100 kDa coated vesicle protein A 107556 O95782 15 14
Adaptor-related protein complex 3 beta 2 subunit Neuron-specific vesicle coat protein beta-NAP, Beta3B-adaptin, Adaptor protein complex AP-3 beta-2 subunit, Clathrin assembly protein complex 3 beta 2 large chain, AP-3 complex beta-2 subunit 119060 Q13367 10 10
Adenylate kinase isoenzyme 5 ATP-AMP transphorylase 22088 Q9Y6K8 12 35
Annexin A5 Annexin V, Lipocortin V, Endonexin II, Calphobindin I, CBP-I, Placental anticoagulant protein I, PAP-I, PP4, Thromboplastin inhibitor, Vascular anti-coagulant-alpha, VAC-alpha, Anchorin 35937 P08758 10 13
Annexin A6 Annexin VI, Lipocortin VI, Chromobindin 20, 67 kDa calelectrin, Calphobindin-II, P68, P70, Protein III 75874 P08133 10 14
Aromatic-L-amino-acid decarboxylase AADC, DOPA decarboxylase, DDC 53895 P20711 9 13
Atrial natriuretic peptide receptor A precursor ANP-A, ANPRA, Guanylate cyclase, Atrial natriuretic peptide A-type receptor 118920 P16066 8 6
Beta enolase Enolase 3, 2-phospho-D-glycerate hydro-lyase 46987 P13929 13 17
Cadherin EGF LAG seven-pass G-type receptor 1 precursor Flamingo homolog 2, hFmi2 329489 Q9NYQ6 5 2
Cadherin EGF LAG seven-pass G-type receptor 3 precursor Flamingo homolog 1, hFmi1, Multiple epidermal growth factor-like domian 2, Epidermal growth factor-like 1 358261 Q9NYQ7 8 2
Cadherin-23 precursor Otocadherin 369528 Q9H251 6 2
CASK Calcium/calmodulin-dependent serine protein kinase, Lin-2 homolog 105066 O14936 17 12
Catenin delta-1 p120 catenin, p120(ctn), Cadherin-associated Src subsrate, CAS, p120(cas) 108171 O60716 10 7
CDK5 regulatory subunit associated protein 2 CDK5 activator-binding protein C48 215099 Q96SN8 6 4
CDK5 regulatory subunit-associated protein 1 CDK5 activator-binding protein C42, CGI-05, HSPC167 67689 Q96SZ6 11 18
cGMP-dependent protein kinase 1, beta isozyme cGK 1 beta, cGK1-beta 77805 P14619 9 12
Choline O-acetyltransferase CHOACTase, Choline acetylase, ChAT 82569 P28329 11 16
Complement C1q subcomponent, B chain precursor
26460 P02746 8 25
Connexin 36 Cx36, Gap junction alpha-9 protein 36093 Q9UKL4 9 9
Dihydropyrimidinase related protein-3 DRP-3, Unc-33-like phosphoprotein, ULIP protein, Collapsin response mediator protein 4, CRMP-4 61964 Q14195 7 10
DnaJ homolog subfamily B member5 Heat shock protein Hsp40-3, Heat shock protein cognate 40, Hsc40, HSP40-2 39134 O75953 11 15
ERC protein 1 ELKS protein, Rab6 interacting protein 2 128087 Q8IUD2 33 20
Excitatory amino acid transporter 1 Sodium-dependent glutamate/aspartate transporter 1, GLAST-1, EAAT-1, Glial glutamate transporter 59573 P43003 7 11
Excitatory amino acid transporter 4 Sodium-dependent glutamate/aspartate transporter, EAAT4 61566 P48664 7 10
Exocyst complex component Sec10
81854 O00471 6 9
Exocyst complex component Sec5
104067 Q96KP1 14 13
Exostosin-2 Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase, EXT2 82255 Q93063 10 13
Glutamate carboxypeptidase II Membrane glutamate carboxypeptidase, Prostate-specific membrane antigen, PSMA, PSM, mGCP, N-acetylated-alpha-linked acidic dipiptidase I, NAALADase I, Pteroylpoly-gamma-glutamate carboxypeptidase, FGCP, Folate hydrolase 1, 84331 Q04609 12 12
Glutamate receptor-interacting protein 1 GRIP1 protein 122424 Q9Y3R0 13 8
Glyceraldehyde-3-phosphate dehydrogenase GAPDH 35876 P04406 22 37
Harmonin Usher syndrome 1C protein, Autoimmune enteropathy-related antigen AIE-75, Antigen NY-CO-38/NY-CO-37, PDZ-37 protein, USH1C 62224 Q9Y6N9 7 12
Heat shock cognate 71 kDa protein 8 Heat shock 70 kDa protein 8, Intracellular vitamin D binding protein 1, HSC70 70899 Q71U34 9 16
Heat shock protein HSP 90-alpha HSP 86, HSP90a 84674 P07900 33 32
Huntingtin-associated protein 1 HAP-1, Neuroan 1 75515 P54257 11 13
Hyaluronan mediated motility receptor Intracellular hyaluronic acid binding protein, Receptor for hyaluronan-mediated motility, CD168 antigen, RHAMM 84032 O75330 14 17
Kinesin-like protein KIF3B Microtubule plus end-directed kinesin motor 3B, HH0048 85126 O15066 13 14
Kynurenine--oxoglutarate transaminase I Kynurenine aminotransferase I, KATI, Glutamine--phenylpyruvate transaminase, Glutamine transaminase K, GTK, Cysteine-S-conjugate beta-lyase 47875 Q16773 6 11
L-lactate dehydrogenase A LDH-A, LDH-M 36689 P00338 30 36
LAP4 protein Scribble homolog protein, Scrib 174932 Q14160 6 3
Liprin-alpha 1 PTPRF-interacting protein alpha 1, LAR-interacting protein 1, LIP-1, Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha 1 135780 Q13136 24 14
Liprin-alpha 2 PTPRF-interacting protein alpha 2, Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha 2 143144 O75334 17 11
Liprin-alpha 3 PTPRF-interacting protein alpha 3, Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha 3 133497 O75145 17 14
Liprin-alpha 4 PTPRF-interacting protein alpha 4, Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha 4 78079 O75335 11 14
Liprin-beta 1 Protein tyrosine phosphatase receptor type f polypeptide-interacting protein binding protein 1, PTPRF-interacting protein binding protein 1, hSGT2 114039 Q86W92 10 7
MaxiK Calcium-activated potassium channel, subfamily M, alpha subunit 1, Maxi K channel, Calcium-activated potassium channel alpha subunit 1, BK channel, K(VCA)alpha, BKCA alpha, KCa1.1, Slowpoke homolog, Slo honolog, Slo, Slo1, Slo-alpha 137561 Q12791 13 5
Metabotropic glutamate receptor 2 precursor mGluR2 95509 Q14416 9 8
Metabotropic glutamate receptor 8 precursor mGluR8 101742 O00222 6 5
Myosin Va Myosin 5A, Dilute myosin heavy chain, non-muscle, Myosin heavy chain 12, Myoxin 215423 Q9Y4I1 7 4
Neural cell adhesion molecule 1, 140 kDa isoform precursor N-CAM 140, CD56, NCAM1, NCA11 93362 P13591 9 7
Neuronal cell adhesion molecule precursor Nr-CAM, NfCAM-related cell adhesion molecule, Ng-CAM-related, hBravo 143895 Q92823 10 5
Nitric oxide synthase, inducible NOS, type II, Inducible NOS, iNOS, Hepatocyte NOS, HEP-NOS 131118 P35228 14 10
p130Cas-associated protein p140Cap, SNAP-25-interacting protein, SNIP 112466 Q9C0H9 19 10
Palmitoyl-protein thioesterase 2 precursor Palmitoyl-protein hydrolase 2, PPT-2, G14,PPT2 34309 Q9UMR5 13 10
Paraplegin Spastic paraplegia protein 7 88136 Q9UQ90 10 10
Phosphoglycerate kinase 1 Primer recognition protein 2, PRP 2, OK/SW-cl.110 44615 P00558 8 14
PI4-kinase Phosphatidylinositol 4-kinase alpha, PtIns-4-kinase, PI4K-alpha 231294 P42356 5 4
Piccolo protein Aczonin 566666 Q9Y6V0 11 2
Plasma membrane calcium-transporting ATPase 4 PMCA4, Plasma membrane calcium pump isoform 4, Plasma membrane calcium ATPase isoform 4 137921 P23634 15 9
Potassium/sodium hyperpolarizing-activated cyclic nucleotide-gated channel 3 Hyperpolarization-activated cyclic nucleotide-gated potassium channel, HCN3 86033 Q9P1Z3 9 8
Protein kinase C, epsilon type PKC-epsilon 83675 Q02156 9 11
Protein phosphatase 1 regulatory subunit 12B Myosin phosphatase targeting subunit 2, Myosin phosphatase target subunit 2 110419 O60237 16 13
Protocadherin 18 precursor
125309 Q9HCL0 13 8
Protocadherin 20 precursor Protocadherin 13 101928 Q8N6Y1 6 7
Protocadherin 7 precursor Brain-heart protocadherin, BH-Pcdh 116106 O60245 9 7
Protocadherin alpha C2 precursor PCDH-alpha-C2 109451 Q9Y5I4 10 6
Protocadherin gamma A5 precursor PCDH-gamma-A5 100936 Q9Y5G8 9 7
Pyruvate dehydrogenase E1 component alpha subunit, testis-specific form, mitochondrial precursor PDHE1-A type II 42934 P29803 15 28
Pyruvate kinase, isozyme M1/M2 Cytosolic thyroid hormone-binding protein, THBP1 57937 P14618 34 42
Rab5 GDP/GTP exchange factor Rabex-5 79372 Q9UJ41 12 9
Rabaptin-5 Rabaptin-5alpha, Rabaptin-4, Rab GTPase binding effector protein 1 99367 Q15276 20 17
Regulator of G-protein signaling 7 RGS7 57669 P49802 10 13
Serine/threonine-protein kinase PCTAIRE-1
55716 Q00536 7 10
Serine/threonine-protein kinase PCTAIRE-2
59665 Q00537 11 15
SLIT-ROBO Rho GTPase activating protein 3 srGAP3, WAVE-associated Rac GTPase actiating protein, Mental disorder-associated GAP, Rho-GTPase-activating protein 14 124505 O43295 15 12
Sodium/potassium-transporting ATPase alpha-2 chain precursor Sodium pump 2, Na+/K+ ATPase 2 112266 P50993 16 12
Spectrin beta chain, brain 3 Spectrin, non-erythroid beta chain 3, Beta-IV spectrin 288988 Q9H254 10 3
Stonin 1 Stoned B-like factor 83142 Q9Y6Q2 14 11
Synaptotagmin-7 Synaptotagmin VII, SytVII 45568 O43581 11 17
Synaptotagmin-like protein 2 Exophilin 4, Slp2 100797 Q9HCH5 12 10
Syndecan-2 precursor Fibroglycan, Heparan sulfate proteoglycan core protein, HSPG, SYND2 22174 P34741 8 16
Syntaxin binding protein 1 Unc-18 homolog, Unc-18A, Unc-18-1, N-Sec1, p67 67569 P61763 9 16
Syntaxin binding protein 2 Unc-18 homolog 2, Unc-18B, Unc18-2 66439 Q15833 9 13
Syntaxin binding protein 3 Unc-18 homolog 3, Unc-18C, Unc-18-3, Platelet Sec1, PSP 67575 O00186 7 11
Syntaxin-binding protein 6 Amisyn, HSPC156 23554 Q8NFX7 11 39
TBC1 domain family member 3 Rab-Gap for Rab5, TRE17 alpha protein, Prostate cancer gene 17 protein, Rab GTPase-activating protein PRC17 62169 Q8IZP1 6 12
Tudor domain containing protein 7 Tudor repeat associator with PCTAIRE 2, Trap 123603 Q8NHU6 11 7
Unc-13 homolog Munc13-3 135623 Q8NB66 12 8
Vav proto-oncogene
98315 P15498 12 10
Vesicular inhibitory amino acid transporter Vesicular GABA transporter, VIAAT, GABA and glycine transporter, Solute carrier family 32 member1 57416 Q9H598 4 7
Vesicular-fusion protein NSF Vesicle-fusing ATPase, N-ethylmaleimide sensitive fusion protein, NEM-sensitive fusion protein 82655 P46459 13 13
Voltage-dependent N-type calcium channel alpha-1B subunit Voltage-gated calcium channel alpha subunit Cav2.2, L type, Alpha-1 polypeptide isoform 5, Brain calcium channel III, BIII 506282 Q00975 5 2
Voltage-dependent T-type calcium channel alpha-1G subunit Voltage-gated calcium channel alpha subunit Cav3.1, Cav3.1c, NBR13 262474 O43497 5 2
Voltage-dependent T-type calcium channel alpha-1H subunit Voltage-dependent calcium channel alpha subunit Cav3.2, Low-voltage-activated calcium channel alpha 3.2 subunit 259165 O95180 4 1
Voltage-gated P/Q-type calcium channel alpha-1A subunit Voltage-dependent calcium channel alpha subunit Cav2.1, Calcium channel L type, Alpha-1 polypeptide isoform 4, Brain calcium channel I, CACNL1A4 282367 O00555 4 2

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